pdb-database
Installation
SKILL.md
RCSB Protein Data Bank
The Protein Data Bank hosts over 200,000 experimentally determined macromolecular structures plus computed models from AlphaFold and ModelArchive. This skill provides programmatic access to search, download, and analyze structural data.
Applicable Scenarios
| Task | Examples |
|---|---|
| Structure Retrieval | Download coordinates for a known PDB ID |
| Similarity Search | Find structures similar by sequence or 3D fold |
| Metadata Access | Get resolution, method, organism, ligands |
| Dataset Building | Compile structures for ML training or analysis |
| Drug Discovery | Identify ligand-bound structures for a target |
| Quality Filtering | Select high-resolution, well-refined structures |