The Agent Skills Directory

[CREDENTIALS_UNSAFE]: The cosmic module asks for user credentials (email and password) as plaintext function arguments. Similarly, the gpt module requires an OpenAI API key. This approach can lead to credentials being exposed in code repositories or command history.
[EXTERNAL_DOWNLOADS]: The skill automates the retrieval of large datasets and reference genomes from trusted scientific organizations such as Ensembl and the Sanger Institute.
[COMMAND_EXECUTION]: Workflow examples demonstrate the use of the Python subprocess module to execute external bioinformatics tools like kb-python, which represents a vector for arbitrary command execution.
[DATA_EXFILTRATION]: Through the gpt module, research data and genomic sequences may be transmitted to the OpenAI platform.
[REMOTE_CODE_EXECUTION]: The setup commands for modules like alphafold and cellxgene download and install external binaries and Python packages, executing installation scripts from remote sources.

gget-genomic-databases