pydeseq2-differential-expression
Warn
Audited by Gen Agent Trust Hub on Oct 14, 2026
Risk Level: MEDIUMDYNAMIC_EXECUTIONCOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
- [DYNAMIC_EXECUTION]: The skill provides a recipe for saving and reloading fitted datasets using the
picklemodule. The use ofpickle.load()on a file (dds_fitted.pkl) is inherently insecure as it can execute arbitrary code if the file has been tampered with or originates from an untrusted source. - [COMMAND_EXECUTION]: The documentation includes
pip installcommands for standard bioinformatics and visualization libraries (pydeseq2,matplotlib,seaborn). These are standard installation procedures for this domain. - [EXTERNAL_DOWNLOADS]: The skill describes a workflow that starts with loading external data files (
counts.csv,metadata.csv) usingpandas.read_csv(). While standard, this represents the primary ingestion point for external data into the agent's context.
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