The Agent Skills Directory

File System Access: The skill includes parameters for reading local files (query_path) and writing data to the filesystem (raw_output_path). This is used to facilitate the management of large SPARQL queries and the storage of machine-readable results.
Network Interaction: The script performs GET and POST requests to the Bgee SPARQL endpoint at https://www.bgee.org/sparql/, which is a recognized bioinformatics resource for gene expression data.
Data Ingestion Surface: The skill processes and summarizes data from an external API, which is a potential surface for indirect prompt injection considerations.
Ingestion points: Data is retrieved from the external Bgee endpoint within scripts/sparql_request.py.
Boundary markers: The skill does not currently use specific delimiters to separate the ingested data from the agent's internal instructions.
Capability inventory: The scripts/sparql_request.py script has the capability to perform network requests (requests) and access the filesystem (pathlib).
Sanitization: The skill focuses on compacting and summarizing JSON responses for display but does not apply specific sanitization to the remote content.

bgee-skill