opentargets-skill

Operating rules

• Use scripts/opentargets_graphql.py for all Open Targets GraphQL work.
• Use scripts/opentargets_disease_heatmap.py when the user wants the associated-disease bubble grid or a disease-by-datasource evidence matrix.
• The script accepts max_items; for nested GraphQL results, start with max_items=3 to 5.
• Keep GraphQL selection sets narrow and page connection-style fields conservatively.
• Use query_path for long GraphQL documents instead of pasting large inline query strings.
• Re-run requests in long conversations instead of relying on earlier tool output.
• Treat displayed ... in tool previews as UI truncation, not part of the real query.

Execution behavior

• Return concise markdown summaries from the script JSON by default.
• Return the JSON verbatim only if the user explicitly asks for machine-readable output.
• Prefer targeted GraphQL queries that select only the fields needed for the user task.
• Use schema introspection only when necessary; do not dump large schema payloads into chat.
• For the associated-disease heatmap, treat datasourceScores as evidence-source breadth/context. Do not treat heatmap breadth alone as proof of causal target assignment, mechanism, or direction of effect.

Input

• Read one JSON object from stdin.
• Required field: query or query_path