The Agent Skills Directory

[COMMAND_EXECUTION]: The skill uses the Bash tool to perform environment detection, manage version control via Git (git init, git add, git commit), and verify the presence of external utilities like qmd.
[PERSISTENCE]: The skill implements persistence by modifying the agent's core configuration file (.claude/settings.json) to register automation hooks (SessionStart, PostToolUse, Stop). These hooks ensure that the system's operational logic, such as session orientation and note validation, persists across different conversations.
[DYNAMIC_EXECUTION]: The skill dynamically generates and installs a suite of 16 functional skills and multiple Bash scripts. This is achieved by reading source templates and applying a vocabulary transformation algorithm to adapt the tools to the user's specific domain (e.g., Research, Personal Assistant).

setup