baseline-extraction-for-clinical-trials
Installation
SKILL.md
Baseline Extraction (RCT)
This skill extracts 10 key baseline characteristics from clinical trial articles. It implements a hybrid workflow:
- PubMed Lookup: Checks PubMed API using the PMID to verify existence and get basic metadata.
- LLM Extraction: Analyzes the article text to extract detailed baseline data (since PubMed metadata is limited).
When to Use
- Use this skill when you need extracts clinical trial baseline data (study, region, participants, etc.) from article text or pmid. checks pubmed for metadata; always falls back to llm extraction for full details in a reproducible workflow.
- Use this skill when a data analytics task needs a packaged method instead of ad-hoc freeform output.
- Use this skill when the user expects a concrete deliverable, validation step, or file-based result.
- Use this skill when
scripts/extract_pdf.pyis the most direct path to complete the request. - Use this skill when you need the
baseline-extraction for clinical trialspackage behavior rather than a generic answer.