batch-effect-correction
Pass
Audited by Gen Agent Trust Hub on Sep 23, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill provides instructions to install necessary R packages from the Comprehensive R Archive Network (CRAN) and Bioconductor. These are standard, trusted repositories for the R programming language.
- [COMMAND_EXECUTION]: The skill executes local R scripts to perform data processing, batch correction (via ComBat), and visualization. The execution environment is configured for stability through thread-limit environment variables and local path resolution.
- [SAFE]: The scripts in the scripts/ directory implement extensive input validation, checking for unique identifiers, numeric consistency, and statistical design requirements. Robust error handling using custom codes (e.g., SKILL_INVALID_DATA) ensures that failures are reported safely without leaking environment details. No malicious patterns such as obfuscation, credential exfiltration, or unauthorized network activity were detected.
Audit Metadata