Source: https://github.com/aipoch/medical-research-skills

bioDBnet API Skill

This skill provides access to bioDBnet (biological Database network) REST web services. It allows for integrating biological data from multiple databases, converting identifiers, and retrieving pathway or ortholog information.

When to Use

• Use this skill when the request matches its documented task boundary.
• Use it when the user can provide the required inputs and expects a structured deliverable.
• Prefer this skill for repeatable, checklist-driven execution rather than open-ended brainstorming.

Key Features

• Scope-focused workflow aligned to: Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. Use when you need to convert gene/protein IDs, find pathways, or retrieve biological annotations via bioDBnet.
• Packaged executable path(s): scripts/biodbnet_client.py.
• Reference material available in references/ for task-specific guidance.
• Structured execution path designed to keep outputs consistent and reviewable.

Dependencies