brenda-database

Installation
SKILL.md

Source: https://github.com/aipoch/medical-research-skills

When to Use

  • You need kinetic parameters (e.g., Km, kcat, Vmax) for a specific enzyme, organism, or EC number.
  • You want reaction equations/stoichiometry associated with an enzyme (by EC number or enzyme name).
  • You need enzyme property data such as optimal pH/temperature, stability, inhibitors, or activators.
  • You want to discover enzymes by searching for a substrate, product, or EC number.
  • You need to automate retrieval of BRENDA data in a Python pipeline (e.g., for modeling, annotation, or curation).

Key Features

  • SOAP-based programmatic access to the BRENDA database.
  • Retrieval of:
    • Kinetic data: Km, kcat, Vmax
    • Reaction information: reaction equations and related metadata
    • Enzyme discovery: search by substrate/product/EC number
    • Enzyme properties: pH/temperature optima, stability, inhibitors/activators
  • Built-in handling of BRENDA SOAP responses that are returned as complex delimited strings, with parsing performed by the provided script.
  • Credential-based authentication via environment variables or a .env file.
Installs
1
GitHub Stars
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First Seen
Sep 23, 2026
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