chembl-database
Installation
SKILL.md
When to Use
- Find candidate compounds by name or synonym (e.g., searching for “aspirin”) and retrieve their ChEMBL records.
- Filter molecules by physicochemical properties (e.g., molecular weight, LogP) to narrow down drug-like candidates.
- Look up targets (proteins/complexes) and connect them to ligands and known bioactivity measurements.
- Retrieve bioactivity data (e.g., IC50, Ki, EC50) for specific compound–target interactions to support SAR or benchmarking.
- Identify approved drugs and fetch mechanism-of-action information for target validation or competitive landscape analysis.
Key Features
- Molecule search by preferred name and other metadata fields.
- Property-based filtering (e.g., MW, LogP) using ChEMBL API filter syntax.
- Structure-aware querying via SMILES (where supported by the API/client).
- Target lookup and navigation between targets, molecules, and activities.
- Bioactivity retrieval for common endpoints (IC50, Ki, EC50) and related assay context.
- Access to drug-related records, including mechanism information for approved drugs.