consensus-clustering-analysis
Installation
SKILL.md
Consensus Clustering Analysis
When to Use
Use this skill when you need to identify stable sample subtypes from a bulk expression matrix with ConsensusClusterPlus, compare candidate clustering settings with PAC, and export consensus matrix/CDF visualizations.
Do not use this skill for differential expression analysis, single-cell clustering, or non-expression tabular data.
When to Read External Files
| Situation | File to Read | Purpose |
|---|---|---|
| Need algorithm details | references/algorithm.md |
Consensus clustering, PAC scoring, and preprocessing assumptions |
| Need to run analysis | scripts/main.R |
Execute: Rscript scripts/main.R --input_file ... --group_file ... |
| Encounter errors | references/troubleshooting.md |
Common errors and solutions |
| Need CLI examples | references/cli-guide.md |
Detailed CLI usage examples with verified local runs |