gokegg-analysis
Installation
SKILL.md
When To Read External Files
| Situation | File To Read | Purpose |
|---|---|---|
| Need algorithm details | references/algorithm.md |
Statistical methods and formulas |
| Need to run the analysis | scripts/main.R |
Full execution command |
| Encounter an error | references/troubleshooting.md |
Troubleshooting guidance |
| Need CLI examples | references/cli-guide.md |
Parameter usage examples |
When To Use
Use this skill for:
- GO and KEGG enrichment from a gene list derived from bulk RNA-seq or microarray studies
- Supported gene ID types:
SYMBOL,ENSEMBL,ENTREZID - Supported species databases:
org.Hs.eg.db,org.Mm.eg.db,org.Rn.eg.db