gsea
Installation
SKILL.md
When to read external files
| Situation | Read | Purpose |
|---|---|---|
| Need algorithm details | references/algorithm.md |
Statistical method and formulas |
| Need to run an analysis | scripts/main.R |
Full command reference |
| Hit an error | references/troubleshooting.md |
Look up error codes and fixes |
| Need CLI examples | references/cli-guide.md |
Worked argument examples |
Scope
Use this skill for:
- Running GSEA on a gene list ranked by a statistic
- Generating enrichment curve plots from existing
enrichGSEA.csvandgsea_running_scores.csv - Smoke-testing the pipeline with
tests/data/sample_deg_results.csv