Source: https://github.com/aipoch/medical-research-skills

Immune Pathway Analysis

When to Use

Use this skill when the goal is to quantify immune-related pathway activity from bulk expression data and compare pathway enrichment between two sample groups.

Typical requests:

• "Run immune pathway GSVA for these samples."
• "Score immune Reactome pathways and compare case versus control."
• "Generate an immune pathway heatmap from a saved result."
• "Use a local immune gene-set table for pathway scoring."

This skill is appropriate for: