Source: https://github.com/aipoch/medical-research-skills

JASPAR API

This skill provides access to the JASPAR database (https://jaspar.elixir.no/).

When to Use

• Use this skill when you need access jaspar database for transcription factor binding profiles (matrices), collections, and species via rest api. use when user wants to search for transcription factors, retrieve matrix details (pfm/pwm), infer profiles from protein sequences, or explore jaspar collections in a reproducible workflow.
• Use this skill when a evidence insight task needs a packaged method instead of ad-hoc freeform output.
• Use this skill when the user expects a concrete deliverable, validation step, or file-based result.
• Use this skill when scripts/jaspar_client.py is the most direct path to complete the request.
• Use this skill when you need the jaspar-api package behavior rather than a generic answer.

Key Features

• Scope-focused workflow aligned to: Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API. Use when user wants to search for transcription factors, retrieve matrix details (PFM/PWM), infer profiles from protein sequences, or explore JASPAR collections.
• Packaged executable path(s): scripts/jaspar_client.py.
• Reference material available in references/ for task-specific guidance.
• Structured execution path designed to keep outputs consistent and reviewable.