Source: https://github.com/aipoch/medical-research-skills

When to Use

You have a batch of locally downloaded papers (PDF/BibTeX/RIS/CSV/TXT) that must be organized into a consistent library structure.
You need offline deduplication using DOI or normalized Title + Year to avoid repeated entries.
You want to apply manual tags at import time and also derive tags from available metadata keywords.
You need a local, appendable search index (index.jsonl) for later retrieval and filtering.
You must operate in an environment where network access is not allowed and all processing must remain local.

Key Features

Local-only import into a managed literature library directory.
Deterministic deduplication with clear priority rules (DOI → Title+Year → file hash).
Tagging support:
- manual tags via CLI flags
- automatic tags from metadata keywords (when present)
Searchable index generation and maintenance via index.jsonl (one JSON object per line).
Predictable file organization by year and journal, with safe handling of naming conflicts.
Security/compliance-friendly behavior: no external APIs, no credentials, no network calls.