The Agent Skills Directory

[COMMAND_EXECUTION]: The skill provides usage examples for the colabfold_batch command-line tool. These commands are standard for scientific protein folding tasks and involve processing sequence files and specifying model parameters.
[EXTERNAL_DOWNLOADS]: The skill documentation and metadata explicitly state that protein sequences are transmitted to the public MMseqs2 server at api.colabfold.com to perform sequence alignments. This is a well-known service maintained by the scientific community and is the primary mechanism for ColabFold to function without massive local databases.
[DATA_EXFILTRATION]: Transmission of protein sequences to the MMseqs2 server is a core, documented feature of the skill's primary purpose. No sensitive user data, system configuration, or credentials are accessed or transmitted.
[REMOTE_CODE_EXECUTION]: The skill does not download or execute arbitrary scripts from remote sources. It provides instructions on how to configure environment variables and mentions a sed patch for a specific file in the local installation to resolve compatibility issues with gVisor sandboxes.

alphafold2