alphafold2
Pass
Audited by Gen Agent Trust Hub on Sep 22, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTIONINDIRECT_PROMPT_INJECTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill utilizes the MMseqs2 server hosted at api.colabfold.com for generating Multiple Sequence Alignments (MSA). This is a well-known scientific service used by the ColabFold project to perform predictions without requiring large local databases.
- [COMMAND_EXECUTION]: The skill provides instructions for executing the
colabfold_batchcommand-line tool. It includes guidance on configuring environment variables likeTF_FORCE_UNIFIED_MEMORYandXLA_PYTHON_CLIENT_MEM_FRACTIONto optimize performance and prevent hanging in sandboxed environments. - [INDIRECT_PROMPT_INJECTION]: The skill processes user-provided FASTA files containing protein sequences.
- Ingestion points: FASTA sequence files ingested by the
colabfold_batchtool. - Boundary markers: Standard FASTA format syntax (e.g., headers starting with '>').
- Capability inventory: The agent can execute local CLI tools for bioinformatics analysis.
- Sanitization: Input is restricted to sequence data which is validated by the ColabFold runner before processing.
Audit Metadata