The Agent Skills Directory

[SAFE]: No malicious patterns, persistence mechanisms, or privilege escalation attempts were detected. The skill performs legitimate bioinformatics operations using standard libraries.- [EXTERNAL_DOWNLOADS]: The skill retrieves biological data from established scientific resources including UniProt, KEGG, NCBI, and ChEBI. These are well-known services in the research community and are accessed via the official BioServices library.- [INDIRECT_PROMPT_INJECTION]: The skill processes data fetched from external bioinformatics APIs, which is an inherent part of its biological lookup functionality.
Ingestion points: Data is retrieved from remote APIs in scripts/protein_analysis_workflow.py, scripts/pathway_analysis.py, and scripts/compound_cross_reference.py. scripts/batch_id_converter.py reads identifiers from a local user-provided text file.
Boundary markers: Absent; the scripts do not explicitly delimit external content with specific markers.
Capability inventory: The skill uses Bash(python:*) to run Python scripts that perform network API requests and write output to the local file system using open() and csv.writer.
Sanitization: The skill relies on the structured parsing capabilities of the bioservices library (e.g., XML, TSV, and JSON parsers) but does not implement additional filtering of biological data content.

alterlab-bioservices