alterlab-chembl

Installation
SKILL.md

ChEMBL Database

Overview

ChEMBL is a manually curated database of bioactive molecules maintained by the European Bioinformatics Institute (EBI). Release ChEMBL 37 (May 2026) holds ~2.9 million distinct compounds, ~24.5 million bioactivity measurements, ~18,500 targets, and data on approved drugs and clinical candidates (live counts: https://www.ebi.ac.uk/chembl/api/data/status.json). Access and query this data programmatically using the ChEMBL Python client for drug discovery and medicinal chemistry research.

When to Use This Skill

This skill should be used when:

  • Compound searches: Finding molecules by name, structure, or properties
  • Target information: Retrieving data about proteins, enzymes, or biological targets
  • Bioactivity data: Querying IC50, Ki, EC50, or other activity measurements
  • Drug information: Looking up approved drugs, mechanisms, or indications
  • Structure searches: Performing similarity or substructure searches
  • Cheminformatics: Analyzing molecular properties and drug-likeness
  • Target-ligand relationships: Exploring compound-target interactions
  • Drug discovery: Identifying inhibitors, agonists, or bioactive molecules
Installs
66
GitHub Stars
74
First Seen
Apr 12, 2026