The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill facilitates the download of genomic datasets from the official COSMIC repository at cancer.sanger.ac.uk. These downloads originate from a well-known scientific research organization and are standard for the tool's scientific purpose.- [CREDENTIALS_UNSAFE]: The skill requires a COSMIC account and handles user credentials (email and password) to perform authenticated API calls. It correctly implements HTTP Basic Auth to the official Sanger Institute domain and provides a CLI utility that supports secure password entry.- [INDIRECT_PROMPT_INJECTION]: The skill is designed to ingest and process large external scientific data files, which presents a surface for indirect prompt injection. * Ingestion points: External mutation data files (TSV, CSV, VCF formats) downloaded via the COSMIC API (e.g., CosmicMutantExport.tsv.gz). * Boundary markers: No explicit delimiter or instruction-guarding boundaries are defined for the contents of the genomic data files. * Capability inventory: Includes file system writes (saving datasets), network access (API requests), and execution of local Python scripts for data filtering and analysis. * Sanitization: The skill relies on standard bioinformatic libraries such as pandas and pysam to parse the structured genomic data, providing inherent structural validation.- [COMMAND_EXECUTION]: The skill utilizes Python automation and shell commands (curl) to manage the retrieval and transformation of cancer genomic data, which is an expected behavior for its stated bioinformatics workflow.

alterlab-cosmic