The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill facilitates downloading genomic data from Bedbase (bedbase.org), a well-known bioinformatics repository, through the gtars bbcache fetch command.
[PROMPT_INJECTION]: The skill exhibits an indirect prompt injection surface due to its processing of external genomic files.
Ingestion points: Genomic files are ingested via RegionSet.from_bed, RefgetStore.from_fasta, and TreeTokenizer.from_bed_file across various reference modules.
Boundary markers: The skill does not employ specific boundary markers or instructions to isolate processed data from the agent's control flow.
Capability inventory: The skill performs file system operations (read/write) and executes shell commands for genomic analysis via the gtars CLI.
Sanitization: No explicit sanitization or content validation is performed on the ingested genomic data.

alterlab-gtars