alterlab-phylogenetics
Pass
Audited by Gen Agent Trust Hub on Apr 12, 2026
Risk Level: SAFECOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
- [COMMAND_EXECUTION]: The skill executes external bioinformatics tools (MAFFT, IQ-TREE, FastTree) via subprocess calls in both the markdown instructions and the provided Python script. All executions use the list-based argument format, which is a security best practice that prevents shell injection vulnerabilities.
- [EXTERNAL_DOWNLOADS]: The skill instructions provide installation steps for standard, well-known academic software through official package managers such as Bioconda and PyPI. These are established sources for scientific software.
- [SAFE]: No patterns of data exfiltration, credential harvesting, or persistence were detected. The skill's operations are confined to the local filesystem for processing biological sequence data and generating evolutionary trees, consistent with its stated academic purpose.
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