Statistical Analysis Skill

Generate reproducible code (Python preferred, R when necessary) for medical research analyses, run it, and produce publication-ready tables and figures from its output.

Data Privacy Check

Before reading any data file, check whether it might contain Protected Health Information (PHI):

1. If *_deidentified.* files exist in the working directory, use those.
2. If only raw CSV/Excel files exist, ask the user whether the data contain patient identifiers (names, national ID / RRN, contact details); if so, have them de-identify it first with /deidentify.
3. Proceed once the user confirms the data are de-identified or contain no PHI.
4. NEVER display raw PHI values (names, phone numbers, RRN) in your output, because console output is copied into transcripts and drafts. If you encounter them, warn the user and suggest /deidentify.

Reference Files