Batch Cohort Analysis Skill

Generate one analysis script per exposure/outcome combination from a single validated methodology template; only the variables change between scripts.

Inputs

1. Database path(s): CSV/SAS data files (KNHANES, NHANES, NHIS, or any cleaned cohort)
2. Methodology template: One of:
   • Path to a validated R/Python analysis script (from /replicate-study or /cross-national)
   • A paper type template name: nhis_cohort, cross_national, survey_weighted
   • A source paper to extract methodology from (falls back to /replicate-study Phase 1)
3. Combination spec: A list of exposure/outcome pairs, provided as:
   • Inline list: exposures: [depression, obesity, smoking]; outcomes: [diabetes, hypertension, CVD]
   • CSV file with columns: exposure, outcome, (optional) subgroup_vars
   • "all" keyword: generates all pairwise combinations from the lists

Optional Inputs