The Agent Skills Directory

[COMMAND_EXECUTION]: The skill orchestrates manuscript builds using bash scripts and Python's subprocess module to invoke the pandoc binary and chain validation steps.
[EXTERNAL_DOWNLOADS]: The fill_journal_abbrev.py script queries the National Institutes of Health (NIH) PubMed API at eutils.ncbi.nlm.nih.gov for authoritative journal abbreviations. Additionally, check_csl_render.py may fetch style files from zotero.org, which are well-known services.
[DYNAMIC_EXECUTION]: The inject_zotero_cwyw.py script performs runtime monkey-patching of the vendored zotero_to_csl_json function to redirect metadata requests to Zotero's local API.
[INDIRECT_PROMPT_INJECTION]: The skill ingests user-provided markdown and BibTeX files to extract citation keys and captions, creating a theoretical surface for injection.
Ingestion points: Reads manuscript.md and refs.bib across multiple scripts including check_citation_keys.py and check_xref.py.
Boundary markers: Uses specific regex patterns for citekeys like [@key] as delimiters.
Capability inventory: Subprocess calls to pandoc, Word document creation via python-docx, and network access to PubMed.
Sanitization: Processes data using deterministic regex and standard Pandoc parsing; no specific security-focused sanitization is performed on user text.

manage-refs