Multi-Omics Pipeline — Pipeline Skill

Overview

Provide deterministic, copy-paste-ready code for multi-omics data processing tasks: ID mapping, batch correction, integration via MOFA2/mofapy2, enrichment analysis, and consensus clustering.

Usage

• Map gene identifiers across HGNC, Ensembl, and UniProt systems
• Run batch correction (ComBat/ComBat-seq) and multi-omic factor analysis (MOFA2/mofapy2)
• Perform GSEA enrichment and consensus clustering on integrated data

Core Concepts

Response Format