The Agent Skills Directory

[SAFE]: The skill implements a legitimate scientific analysis workflow for ChIP-seq and ATAC-seq data using standard bioinformatics utilities (MACS3, samtools).
[SAFE]: Data access is limited to reading local BAM files and writing results to project-specific output directories, with no evidence of data exfiltration or unauthorized access.
[SAFE]: Human-in-the-loop validation is enforced for critical configuration steps, such as defining the genome size and q-value cutoffs, preventing autonomous execution of high-impact parameters.

peak-calling