Write Methods Section

Generate or update the methods section based on actual scripts in the pipeline. Links code directly to reproducible documentation.

When to Use

• After completing a script in scripts/
• When methods.md is out of sync with code
• Before writing results section
• As part of documentation review

Prerequisites

• At least one script exists in scripts/
• Scripts have docstrings/documentation
• dvc.yaml reflects the pipeline structure (if using DVC)

Common Mistakes to Avoid