The Agent Skills Directory

[SAFE]: The skill provides legitimate documentation and code examples for the Biopython library (version 1.85). All remote interactions are directed toward official NCBI (National Center for Biotechnology Information) web services or local execution of standard bioinformatics tools like BLAST+ and Clustal Omega.
[PROMPT_INJECTION]: An assessment of the indirect prompt injection surface (Category 8) was conducted. The skill's primary function is to parse external biological data files and execute command-line analysis tools. This is a standard functional requirement for bioinformatics, and no malicious patterns were detected.
Ingestion points: Examples for parsing external sequence and structure files using Bio.SeqIO and Bio.PDB are present in SKILL.md and reference documentation.
Boundary markers: None provided in the documentation examples, which is standard for library-level documentation.
Capability inventory: references/alignment.md and references/blast.md document usage of command-line wrappers (ClustalOmegaCommandline, NcbiblastnCommandline) that execute local binaries.
Sanitization: Relies on standard Biopython library parsers for validation and data handling.

biopython