The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill instructs the agent to install the cellxgene-census package from PyPI using uv pip install cellxgene-census. This is a standard practice for using this scientific library.
[INDIRECT_PROMPT_INJECTION]: The skill is designed to ingest large amounts of biological metadata and expression data from the CELLxGENE Census. While this represents a data ingestion surface, the skill is focused on scientific analysis and machine learning workflows rather than processing untrusted natural language instructions that could influence the agent's behavior.
Ingestion points: External data is retrieved via cellxgene_census.get_obs(), cellxgene_census.get_anndata(), and axis_query() in SKILL.md and references/common_patterns.md.
Boundary markers: Not present; the data is treated as scientific input for analysis.
Capability inventory: The skill uses data for visualization (scanpy), statistical calculation, and model training (torch). No high-risk capabilities like arbitrary shell execution or network exfiltration are linked to the ingested data.
Sanitization: The skill relies on the cellxgene-census and tiledbsoma libraries to handle data parsing and filtering.

cellxgene-census