The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill recommends installing the deeptools package via a standard package manager. This is a legitimate and widely used bioinformatics toolkit available on public registries.\n- [COMMAND_EXECUTION]: The skill includes a scripts/workflow_generator.py utility that generates bash scripts for genomic analysis. These scripts automate the execution of deepTools command-line utilities for data processing and visualization.\n- [INDIRECT_PROMPT_INJECTION]: The skill is designed to process external genomic data files (BAM, BED, bigWig) provided by the user for analysis.\n
Ingestion points: The scripts/validate_files.py script reads BED files to verify genomic coordinates and file formatting.\n
Boundary markers: Not applicable as the skill processes data using standalone command-line utilities rather than interpolating file content into the agent's prompt context.\n
Capability inventory: The skill facilitates the creation and execution of bash scripts that interact with the local file system and deepTools binaries.\n
Sanitization: The validation script performs integrity checks on BED file columns and ensures coordinates are valid integers before processing.

deeptools