The Agent Skills Directory

[COMMAND_EXECUTION]: The skill wraps CLI-based bioinformatics tools (MAFFT, IQ-TREE, FastTree) using Python's subprocess module. All calls use list-based arguments without the shell=True parameter, which is a secure practice to prevent shell injection. Static analysis findings regarding these calls were evaluated and confirmed to be benign.
[EXTERNAL_DOWNLOADS]: Installation instructions point to established and trusted community repositories including Bioconda and PyPI. No unauthorized remote code execution or suspicious downloads from unknown sources are present.
[SAFE]: No malicious patterns such as prompt injection, data exfiltration, or obfuscation were found. The skill operates within its defined scope of biological sequence analysis.

phylogenetics