The Agent Skills Directory

[SAFE]: The skill is a legitimate documentation resource for the genoray bioinformatics library. It outlines the public API, class structures, and command-line usage for processing VCF, PGEN, and SparseVar files.
[EXTERNAL_DOWNLOADS]: The documentation mentions genoray.cosmic_signatures, which is described as fetching and caching reference signatures from COSMIC using the pooch library. This is a standard and transparent feature for scientific software to retrieve necessary reference datasets.
[COMMAND_EXECUTION]: The skill includes extensive examples of CLI commands (e.g., genoray write vcf, genoray view). These are provided as usage instructions for the developer/user and do not contain any hidden or automated execution patterns that would pose a risk to the environment.
[DATA_EXPOSURE]: The skill mentions standard genomic file paths and formats (.vcf, .pgen, .svar) but does not attempt to access sensitive system files, hardcoded credentials, or private user data.

genoray-api