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completion-verifier
Verification system that ensures tasks are truly complete before marking them done, preventing premature completion claims through systematic checklist validation
14archive-workflow
Use when organizing projects - detecting clutter, enforcing naming conventions, structuring directories, managing gitignore, or assessing project expandability. Triggers on project organization requests, file naming audits, or gitignore maintenance needs.
14calculator
Use when quantitative feasibility checks are needed, order-of-magnitude estimates must be established, or detailed models are required to validate design assumptions and identify rate-limiting steps
11copilot
Use when reviewing code for correctness, efficiency, edge cases, or potential bugs in an adversarial but collaborative manner, or when bioinformatician/developer needs a second opinion.
11junior-developer
Use when implementing well-scoped Python tasks with clear requirements, writing unit tests, and producing documented code for senior-developer review.
11software-developer
Use when implementing production-quality bioinformatics software with proper error handling, logging, testing, and documentation, following software engineering best practices.
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