pysam
Pass
Audited by Gen Agent Trust Hub on Oct 5, 2026
Risk Level: SAFEINDIRECT_PROMPT_INJECTION
Full Analysis
- [SAFE]: The skill provides instructions and examples for using the legitimate pysam bioinformatics library. All demonstrated operations are local and consistent with bioinformatics standards.
- [INDIRECT_PROMPT_INJECTION]: The skill processes genomic data files, which represents a data ingestion surface. 1. Ingestion points: Alignment, variant, and sequence files read via pysam APIs in SKILL.md and reference files. 2. Boundary markers: None; genomic formats are strictly structured. 3. Capability inventory: File write operations and wrapped CLI command execution (samtools/bcftools). 4. Sanitization: None; processing is handled by the underlying htslib library. Note: This surface is assessed as safe due to the specialized nature of the binary and structured data.
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