bioservices
BioServices
Python package providing programmatic access to ~40 bioinformatics web services. Handles REST and SOAP protocols transparently.
Installation
uv pip install bioservices
When to Use
- Querying multiple databases in a single workflow (UniProt + KEGG + ChEMBL)
- ID mapping across databases (UniProt ↔ KEGG ↔ Ensembl ↔ PDB)
- Pathway analysis (KEGG, Reactome)
- Protein-protein interaction queries (PSICQUIC: MINT, IntAct, BioGRID, 30+ others)
- Gene ontology lookups (QuickGO)
For quick single-database lookups, prefer gget.
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