galaxy-tool-wrapping
Pass
Audited by Gen Agent Trust Hub on Sep 27, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill is a technical documentation resource for Galaxy tool developers, authored by delphine-l. It provides guidelines for creating tool wrappers, managing dependencies via Conda, and performing automated testing with Planemo.
- [SAFE]: The instructions actively promote security best practices, such as properly quoting user inputs in Cheetah templates (e.g., '$input_file') to prevent shell command injection.
- [SAFE]: All external URLs and references point to official documentation (e.g., docs.galaxyproject.org, planemo.readthedocs.io) or trusted repositories within the galaxyproject GitHub organization.
- [SAFE]: No obfuscation, data exfiltration patterns, or unauthorized privileged operations were detected. The command execution patterns (planemo test, planemo lint) are standard for the tool wrapping development workflow.
- [SAFE]: The skill dependencies and recommended tools (bioconda, conda-forge) are established industry standards for the bioinformatics and Galaxy communities.
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