phylogenetics
Phylogenetics Skills
Expert knowledge for phylogenetic tree analysis, visualization, and annotation management.
ITOL Annotation File Troubleshooting
Common Issue: Species Name Mismatches
Problem: Species in tree file don't match annotation files, causing missing data in ITOL visualization.
Root Causes:
- Tree processing tools (e.g., TimeTree) may abbreviate species names
- Capitalization inconsistencies (e.g.,
Alca_TordavsAlca_torda) - Genus-only names replacing full binomial nomenclature
Solution Workflow:
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