The Agent Skills Directory

[SAFE]: The skill provides comprehensive guidance on using the official DNAnexus platform tools. All code examples use the standard dxpy library and follow documented platform patterns.
[COMMAND_EXECUTION]: The skill describes the use of subprocess and the dx CLI to run bioinformatics tools and manage platform resources. These operations are essential for the skill's primary purpose of genomics pipeline development and are performed using legitimate platform utilities.
[DYNAMIC_EXECUTION]: Documentation includes examples of installing dependencies at runtime via pip and configuring app environments using dxapp.json. These are standard methods for managing software environments in DNAnexus apps and do not pose a security risk in this context.

dnanexus-integration