The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill downloads the gget Python package and various bioinformatics datasets, such as AlphaFold model parameters and the Eukaryotic Linear Motif database, from well-known scientific repositories and official package registries.
[COMMAND_EXECUTION]: The instructions and included scripts execute shell commands to manage environment setup using uv or pip, download genomic reference files via curl, and run specialized bioinformatics software like kallisto and muscle.
[INDIRECT_PROMPT_INJECTION]: The skill ingests sequence data and gene annotations from external sources including NCBI, Ensembl, and UniProt. This ingestion surface is a core requirement for bioinformatics analysis and is used for processing scientific data within the agent context.
[CREDENTIALS_UNSAFE]: The skill provides documentation and examples for using the COSMIC and OpenAI APIs. It uses clear placeholders for required credentials and instructs users to provide their own keys at runtime, conforming to standard security practices.

gget