The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill documentation suggests installing the reactome2py library, which is the official Python client provided by the Reactome organization.
[COMMAND_EXECUTION]: The helper script scripts/reactome_query.py executes shell-based commands to interact with the Reactome API and manages local file operations to save analysis results.
[INDIRECT_PROMPT_INJECTION]: The skill possesses an attack surface for indirect prompt injection as it ingests untrusted data from user-provided gene lists and expression files.
Ingestion points: The scripts/reactome_query.py script and SKILL.md examples read external files (e.g., gene_list.txt, expression_data.tsv) to process biological data.
Boundary markers: No specific delimiters or safety instructions are used when interpolating file content into API requests.
Capability inventory: The skill utilizes network capabilities via the requests library to communicate with reactome.org and performs file system writes to store analysis output.
Sanitization: Input data is processed as raw identifiers without specific sanitization before being transmitted to the external API.

reactome-database