bulk-rnaseq
Pass
Audited by Gen Agent Trust Hub on Jun 15, 2026
Risk Level: SAFE
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill uses well-known bioinformatics software and official repositories such as nf-core and Bioconda for dependency management.
- [COMMAND_EXECUTION]: Orchestrates common command-line tools for genomic analysis (STAR, Salmon, Nextflow). All commands are relevant to the skill's stated purpose.
- [SAFE]: No obfuscation, persistence, or privilege escalation patterns were found.
- [SAFE]: The skill processes untrusted user data via CSV/TSV files.
- Ingestion points: scripts/build_counts_matrix.py and scripts/validate_samplesheet.py.
- Boundary markers: None.
- Capability inventory: Local file reading and writing using pandas and pathlib.
- Sanitization: No specific protection against indirect prompt injection in processed scientific data.
Audit Metadata