The Agent Skills Directory

[SAFE]: The skill facilitates the installation of the legitimate 'cobra' library from PyPI using standard package managers. References to external resources like BiGG and BioModels are standard for systems biology research and represent trusted data sources for metabolic models.
[INDIRECT_PROMPT_INJECTION]: The skill is designed to ingest external metabolic model files in SBML, JSON, and YAML formats.
Ingestion points: External data enters through functions like read_sbml_model and load_json_model in SKILL.md and references/workflows.md.
Boundary markers: The instructions do not define specific delimiters for the content of these models.
Capability inventory: The skill possesses Bash and Write capabilities, and scripts perform file-writing operations via to_csv and savefig.
Sanitization: Validation is performed implicitly by the COBRApy library's parser. While this represents a standard attack surface for data-processing tools, the structured nature of metabolic models makes this a low-risk profile consistent with the skill's primary purpose.

cobrapy