Skills
skills/eturkes/claude-scientific-skills/pacsomatic/Gen Agent Trust Hub

pacsomatic

Pass

Audited by Gen Agent Trust Hub on Jun 15, 2026

Risk Level: SAFECOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
  • [COMMAND_EXECUTION]: The helper script scripts/run_pacsomatic.py executes shell commands to run Nextflow and submit jobs to schedulers like Slurm or LSF. This is the core functionality of the skill and uses shlex.quote to ensure safe command construction.
  • [EXTERNAL_DOWNLOADS]: The skill facilitates the download of the pipeline source code from the official nf-core GitHub repository and manages Conda environments for runtime dependencies. These are standard operations for bioinformatics workflows.
Audit Metadata
Risk Level
SAFE
Analyzed
Jun 15, 2026, 12:02 AM
Security Audit — agent-trust-hub — pacsomatic