The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill installs reputable Python packages (gseapy, gprofiler-official) from official registries. It also connects to established bioinformatics services including Enrichr (Ma'ayan Lab), g:Profiler (University of Tartu), and MSigDB (Broad Institute) to fetch gene-set libraries.
[COMMAND_EXECUTION]: The provided helper script scripts/run_enrichment.py performs data transformation and statistical analysis using pandas and numpy. It handles local file inputs for gene lists and differential expression results using standard file parsing methods without exposing the system to arbitrary command execution.
[DATA_EXFILTRATION]: Network activity is restricted to fetching scientific metadata and gene-set definitions from authoritative academic sources. No sensitive local data is transmitted to unauthorized domains.

pathway-enrichment