phylogenetics
Pass
Audited by Gen Agent Trust Hub on Apr 16, 2026
Risk Level: SAFECOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
- [COMMAND_EXECUTION]: The skill invokes bioinformatics command-line tools like MAFFT, IQ-TREE 2, and FastTree using the subprocess.run function. By passing command arguments as a list rather than a single string, the skill avoids shell interpretation and protects against command injection vulnerabilities.
- [EXTERNAL_DOWNLOADS]: Software installation instructions point to reputable and established sources, specifically the Bioconda channel for Conda and the official Python Package Index (PyPI).
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