pysam
Pass
Audited by Gen Agent Trust Hub on Apr 16, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill documents legitimate use of the 'pysam' library for bioinformatics tasks such as reading and writing SAM/BAM/CRAM, VCF/BCF, and FASTA/FASTQ files.
- [EXTERNAL_DOWNLOADS]: The skill correctly identifies the 'pysam' package as a dependency, which is a well-known and widely-used tool in the scientific community.
- [COMMAND_EXECUTION]: The skill provides examples of using 'pysam.samtools' and 'pysam.bcftools', which are standard API wrappers for executing these bioinformatics tools directly from Python.
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