bio-annotation
Installation
SKILL.md
Bio Annotation
Functional annotation and taxonomy inference from sequence homology.
Instructions
- Read
docs/README.mdand the relevant tool guides before running anything. - For InterProScan, read
docs/interproscan-usage.mdand validate the exact CLI with--helpor--version. - Run InterProScan for domain/family annotation.
- Run eggnog-mapper for orthology-based annotation.
- Run DIAMOND and resolve taxonomy with TaxonKit.
Quick Reference
| Task | Action |
|---|---|
| Run workflow | Follow the steps in this skill and capture outputs. |
| Validate inputs | Confirm required inputs and reference data exist. |
| Review outputs | Inspect reports and QC gates before proceeding. |
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