bio-annotation
Pass
Audited by Gen Agent Trust Hub on Oct 5, 2026
Risk Level: SAFEINDIRECT_PROMPT_INJECTIONEXTERNAL_DOWNLOADS
Full Analysis
- [INDIRECT_PROMPT_INJECTION]: The skill processes protein sequences and annotation data from external files such as proteins.faa and raw_annotations.tsv. This ingestion surface is managed by the build_annotation_artifacts.py script, which enforces exact TSV headers and performs numeric validation on fields like e_value and confidence, preventing the processing of non-numeric malicious payloads. Logic is restricted to data transformation, statistical calculation, and file I/O using Polars.
- [EXTERNAL_DOWNLOADS]: Usage guides provide instructions and links to download tools and databases from official repositories including GitHub (bbuchfink/diamond, eggnogdb/eggnog-mapper, ebi-pf-team/interproscan, shenwei356/taxonkit) and the EBI FTP server. These are well-known and trusted sources in the scientific community, and the documentation describes standard procedures for their manual setup.
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